Figures for frequency-picking

MAINT: move def text_color_legend to resonator_plotting.py
FIX: measurementfreqs not defined.
FIX: symb not defined
Aesthetics: heatmaps for publication

1) violin plot uses colored spots instead of white
2) Unfinished attempt to include log minor ticks
3) New plots showing that the phase error (privileged) is the most important thing
4) paper style graphs for varying number of frequencies measured
5) simulated_experiment now catches issues where the SVD does not converge.

also go all the way across using axvline and axhline instead of vlines and hlines

Using error posed a problem. Was able to fix this but I'm still only using 2 frequencies because I'm getting an "SVD did not converge" error.

Added NetMAP. Changed some plotting things because now I have three sets of data.

Began a case study using Viva's code to pick the best frequencies for NetMAP.

I used to call it resonatorSVDanalysis.py but I renamed it NetMAP.py

…tory

Did multiple case studies with selected frequencies instead of 10 frequencies between 0.001 and 4.
Also fixed the damping coefficients so that they will be smaller and guarantee a resonant system.

Successfully tested frequencies and NetMAP recovery abilities on two systems and created heat maps.

I only graphed the first amplitude as an example.

The scaling part is not working the way I think it is supposed to yet. But can still not scale the residuals in all functions, so we can still take data the same way as before if needed.

… True or False

…ypes

Currently, the run time is far too long. I believe something is wrong with the polar fitting because the error obtained is in the thousands. I'm not sure why the curve fitting isn't working now when it has in the past.

Not yet good to run 100 systems but almost there.

I have edited the code to use timeit.timeit for timing the three functions called multiple_fit_amp_phase, multiple_fit_X_Y, and get_parameters_NetMAP. I have begun to carry out that testing as well.